Despite intensive studies in the last decades many aspects of nephrolithias
is still remain to be elucidated. Supersaturation with respect to lithogeni
c substances explains stones composed of cystine, uric acid, struvite, and
calcium stones secondary to systemic diseases. In this subset there is a cl
ear separation between patients and controls, and stone activity is well re
lated to alterations in the physicochemistry of the urine environment. The
understanding of the mechanisms of idiopathic calcium nephrolithiasis, on t
he other hand, is controversial, because we are still unable to establish c
lear-cut cause-effect relations between metabolic and physicochemical abnor
malities and stone formation. Recent studies have been centered on the kidn
ey, not only as the end organ of biochemical derangements due to systemic o
r environmental factors, but also as a complex laboratory where some events
conduct to and others defend from lithogenesis. Many of these phenomena oc
cur in the proximal tubule. Molecular biology has explained some types of h
ypercalciuria, which are due to genetic mutations altering tubular function
, and similar results are expected for hypocitraturia and hyperoxaluria. Th
e latter is conducive to stone formation through several mechanisms includi
ng supersaturation, oxidative stress on tubular cells, and interference wit
h some natural inhibitors. The long list of inhibitors includes ionic and m
acromolecular moieties, some being produced within the nephron in response
to lithogenic insults, and some affecting not only crystallization but also
crystal cell adherence. Crystal trapping is believed to anticipate a renal
stone. However, much has still to be clarified on their actual role in cal
cium nephrolithiasis, by what mechanisms they act, if patients and controls
differ in the excretion and structure of some inhibitors, and whether diff
erences are genetically determined.