The influence of wave reflection and energy dissipation by breaking and by
porous flow induced by a permeable submerged structure on second-order mean
quantities such as mass flux, energy flux, radiation stress, and mean wate
r level is analyzed. For this purpose, analytical expressions for those mea
n quantities in terms of the shape functions are obtained. The dependence o
f those quantities on the incident wave characteristics, structure geometry
, and permeable material characteristics is modeled, extending the writers'
previous work including wave breaking. Two models for regular waves are pr
esented: a 2D model to be applied to submerged trapezoidal breakwaters and
a 3D model for submerged permeable rectangular breakwaters. Both models are
able to reproduce experimental wave height transformation as well as mean
water level variations along the wave flume with reasonable accuracy. Resul
ts give useful information for engineering applications of wave height evol
ution and set-up and set-down evolution in the vicinity of the submerged pe
rmeable structure.