Jf. Kugel et Ja. Goodrich, A kinetic model for the early steps of RNA synthesis by human RNA polymerase II, J BIOL CHEM, 275(51), 2000, pp. 40483-40491
Eukaryotic mRNA synthesis is a highly regulated process involving numerous
proteins acting in concert with RNA polymerase II to set levels of transcri
ption from individual promoters. The transcription reaction consists of mul
tiple steps beginning with preinitiation complex formation and ending in th
e production of a full-length primary transcript. We used pre-steady-state
approaches to study the steps of human mRNA transcription at the adenovirus
major late promoter in a minimal in vitro transcription system. These kine
tic studies revealed an early transition in RNA polymerase II transcription
, termed escape commitment, that occurs after initiation and prior to promo
ter escape. Escape commitment is rapid and is characterized by sensitivity
to competitor DNA. Upon completion of escape commitment, ternary complexes
are resistant to challenge by competitor DNA and slowly proceed forward thr
ough promoter escape. Escape commitment is stimulated by transcription fact
ors TFIIE and TFIIH. We measured forward and reverse rate constants for dis
crete steps in transcription and present a kinetic model for the mechanism
of RNA polymerase II transcription that describes five distinct steps (prei
nitiation complex formation, initiation, escape commitment, promoter escape
, and transcript elongation) and clearly shows promoter escape is rate-limi
ting in this system.