Pandinus imperator scorpion toxins Pi2 and Pi3 differ only by a single amin
o acid residue (neutral Pro7 in Pi2 vs. acidic Glu7 in Pi3). The binding ki
netics of these toxins to human Kv1.3 showed that the decreased on rate (k(
ON) = 2.18 x 10(8) M(-1)sec(-1) for Pi2 and 1.28 x 10(7) M(-1)sec(-1) for P
i3) was almost entirely responsible for the increased dissociation constant
(K-d) of Pi3 (K-d = 795 pM) as compared to Pi2 (K-d = 44 pM). The ionic st
rength dependence of the association rates was exactly the same for the two
toxins indicating that through-space electrostatic interactions can not ac
count for the different on rates. Results were further analyzed on the basi
s of the three-dimensional structural models of the toxins. A 3D structure
of Pi3 was generated from the NMR spectroscopy coordinates of Pi2 by comput
er modeling. The Pi3 model resulted in a salt bridge between Glu7 and Lys24
in Pi3. Based on this finding our interpretation of the reduced on rate of
Pi3 is that the intramolecular salt bridge reduces the local positive elec
trostatic potential around Lys24 resulting in decreased short-range electro
static interactions during the binding step. To support our finding, we con
structed a 3D model of the Ser-10-Asp Charybdotoxin mutant displaying disti
nctly reduced affinity for Shaker channels. The mutant Charybdotoxin struct
ure also displayed a salt bridge between residues Asp10 and Lys27 equivalen
t to the one between Glu7 and Lys24 in Pi3.