Both drift and selection are important for nucleotide substitutions in evol
ution. The nearly neutral theory was developed to clarify the effects of th
ese processes. In this article, the nearly neutral theory is presented with
special reference to the nature of weak selection. The mean selection coef
ficient is negative, and the variance is dependent on the environmental div
ersity Some facts relating to the theory are reviewed. As well as nucleotid
e substitutions, illegitimate recombination events such as duplications, de
letions and gene conversions leave indelible marks on molecular evolution.
Gene duplication and conversion are sources of the evolution of new gene fu
nctions. Positive selection is necessary for the evolution of novel functio
ns. However, many examples of current gene families suggest that both drift
and selection are at work on their evolution.