Rapid adaptive fixation of a new favorable mutation is expected to affect n
eighboring genes along the chromosome. Evolutionary theory predicts that th
e chromosomal region would show a reduced level of genetic variation and an
excess of rare alleles, We have confirmed these predictions in a region of
the X chromosome of Drosophila melanogaster that contains a newly evolved
gene far a component of the sperm axoneme. In D, simulans, where the novel
gene does not exist, the pattern of genetic variation is consistent with se
lection against recurrent deleterious mutations. These findings imply that
the pattern of genetic variation along a chromosome may be useful for infer
ring its evolutionary history and for revealing regions in which recent ada
ptive fixations have taken place.