Relationships among 35 species of Tropaeolaceae are estimated based on nucl
eotide sequence variation in plastid DNA (the rbcL gene and the rps16 intro
n) and nuclear ribosomal DNA (the ITS1-5.8S-ITS2 tandem repeat). Tropaeolum
becomes paraphyletic when Magallana and Trophaeastrum are segregated; ther
efore, Magallana and Trophaeastrum should be reduced to synonyms of Tropaeo
lum. The two new combinations Tropaeolum porifolium (Cav.) L.Andersson & S.
Andersson and T. trialatum (Suess.) L.Andersson & S.Andersson are made. Fur
ther, although most of the sections of Tropaeolum that were recognised in S
parre and Andersson's monograph are monophyletic, only two entities can be
distinguished that are both monophyletic and morphologically diagnosable. T
herefore, the genus Tropaeolum should be subdivided into two sections, T. s
ect. Tropaeolum and T. sect. Chilensia. Tropaeolum sect. Tropaeolum should
include the formerly recognised sections Bicolora, Dipetala, Mucoronata, Sc
hizotrophaeum, Serratociliata, Tropaeolum, and Umbellata. Tropaeolum sect.
Chilensia should include the formerly recognised genera Magallana and Troph
aeastrum, and the formerly recognised T. sect. Chymocarpus.