Pseudomonas aeruginosa lung infection is an important cause of morbidity an
d mortality in cystic fibrosis (CF). Longitudinal assessment of the phenoty
pic changes in P. aeruginosa isolated from young children with CF is lackin
g. This study investigated genotypic and phenotypic changes in P. aeruginos
a from oropharynx (OP) and bronchoalveolar lavage fluid (BALF) in a cohort
of 40 CF patients during the first 3 years of life; antibody response was a
lso examined. A high degree of genotypic variability was identified, and ea
ch patient had unique genotypes. Early isolates had a phenotype distinct fr
om those of usual CF isolates: generally nonmucoid and antibiotic susceptib
le. Genotype and phenotype correlated between OP and BALF isolates. As dete
rmined by culture, 72.5% of patients demonstrated P. aeruginosa during thei
r first 3 years. On the basis of combined culture and serologic results, 97
.5% of patients had evidence of infection by age 3 years, which suggests th
at P. aeruginosa infection occurs early in CF and may be intermittent or un
detectable by culture.