Domestication entails control of wild species and is generally regarded as
a complex process confined to a restricted area and culture. Previous DNA s
equence analyses of several domestic species have suggested only a Limited
number of origination events. We analyzed mitochondrial DNA (mtDNA) control
region sequences of 191 domestic horses and found a high diversity of matr
ilines. Sequence analysis of equids from archaeological sites and Late Plei
stocene deposits showed that this diversity was not due to an accelerated m
utation rate or an ancient domestication event. Consequently, high mtDNA se
quence diversity of horses implies an unprecedented and widespread integrat
ion of matrilines and an extensive utilization and taming of wild horses. H
owever, genetic variation at nuclear markers is partitioned among horse bre
eds and may reflect sex-biased dispersal and breeding.