A compact, real-time PCR instrument was developed for rapid, multiplex anal
ysis of nucleic acids in an inexpensive, portable format. The instrument co
nsists of a notebook computer, two reaction modules with integrated optics
for four-color fluorescence detection, batteries, and a battery-charging sy
stem, The instrument weighs 3.3 kg, measures 26 x 22 x 7.5 cm, and can run
continuously on the internal batteries for 4 h, Independent control of the
modules allows differing temperature profiles and detection schemes to be r
un simultaneously, Results are presented that demonstrate rapid (1) detecti
on and identification of Bacillus subtilis and Bacillus thuringensis spores
and (2) characterization of a single nucleotide polymorphism for the hered
itary hemochromatosis gene.