Rare events by constrained molecular dynamics

Citation
G. Ciccotti et M. Ferrario, Rare events by constrained molecular dynamics, J MOL LIQ, 89(1-3), 2000, pp. 1-18
Citations number
30
Categorie Soggetti
Physical Chemistry/Chemical Physics
Journal title
JOURNAL OF MOLECULAR LIQUIDS
ISSN journal
01677322 → ACNP
Volume
89
Issue
1-3
Year of publication
2000
Pages
1 - 18
Database
ISI
SICI code
0167-7322(200012)89:1-3<1:REBCMD>2.0.ZU;2-4
Abstract
We present a computationally efficient molecular dynamics method, based on holonomic constraints, devised to estimate the rate constants of rare activ ated events of short duration. We assume that the process is described by a reaction coordinate xi (r), a well-defined function in configuration space , and we constrain the system at the "bottleneck" region by prescribing the value of xi (r) MD trajectories sample phase space according to a biased c onfigurational distribution and averages can be taken from such a new Blue Moon. ensemble, with suitable reweighting, to study rare events. (C) 2000 E lsevier Science B.V. All rights reserved.