Active zone material at the nervous system's synapses is situated next to s
ynaptic vesicles that are docked at the presynaptic plasma membrane, and ca
lcium channels that are anchored in the membrane. Here we use electron micr
oscope tomography to show the arrangement and associations of structural co
mponents of this compact organelle at a model synapse, the frog's neuromusc
ular junction. Our findings indicate that the active zone material helps to
dock the vesicles and anchor the channels, and that its architecture provi
des both a particular spatial relationship and a structural linkage between
them. The structural linkage may include proteins that mediate the calcium
-triggered exocytosis of neurotransmitter by the synaptic vesicles during s
ynaptic transmission.