IE-Kb: intron exon knowledge base

Citation
Mk. Sakharkar et al., IE-Kb: intron exon knowledge base, BIOINFORMAT, 16(12), 2000, pp. 1151-1152
Citations number
12
Categorie Soggetti
Multidisciplinary
Journal title
BIOINFORMATICS
ISSN journal
13674803 → ACNP
Volume
16
Issue
12
Year of publication
2000
Pages
1151 - 1152
Database
ISI
SICI code
1367-4803(200012)16:12<1151:IIEKB>2.0.ZU;2-3
Abstract
IE-Kb (Intron Exon-KnowIedge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redun dant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in Knowledge sets are ranked based on t heir intron length, exon length and protein length with relational hyper-li nks to the corresponding intron phase, intron position, intron sequence, ge ne definition and parent GenBank entry.