In Drosophila, Engrailed is a nuclear regulatory protein with essentia
l roles during embryonic development, Although Engrailed is a transcri
ption factor, little progress has been achieved in identifying its tar
get genes. We report here the identification of an effector gene, the
beta 3-tubulin gene, as a direct target of Engrailed. The cytological
location of beta 3-tubulin, 60C, is a strong site of Engrailed binding
on polytene chromosomes. Immunostaining analysis of a transgenic line
containing a P[beta 3-tubulin-lacZ] construct shows an additional sit
e of Engrailed binding at the location of the transgene. Molecular ana
lysis allowed identification of several Engrailed binding sites, both
in vitro and in vivo, within the first intron of the beta 3-tubulin lo
cus. Engrailed binding sites identified in vitro are active in larvae.
Furthermore, expression of beta 3-tubulin is derepressed in the ectod
erm of engrailed mutant embryos. Repression of beta 3-tubulin by Engra
iled is also obtained when Engrailed is ectopically expressed in embry
onic mesoderm. Finally, two different sets of Engrailed binding sites
are shown to be involved in the early and late regulation of beta 3-tu
bulin by Engrailed during embryogenesis.