Lactobacilli are of great commercial value because they are widely used in
fermented foods as probiotics or starter cultures. Traditional methods of b
acterial enumeration, identification, and characterisation are often insuff
icient for monitoring specific strains in complex, mixed-strain microbial c
onsortia of lactobacilli. In the past few years, due to the use of molecula
r methods, knowledge about the microbial diversity of the genus Lactobacill
us has dramatically increased. The molecular techniques described in this r
eview can enhance the development of taxonomy and molecular microbial ecolo
gy of lactobacilli by providing ways of characterising mixed microbial comm
unities of this industrially important group of microorganisms.