Chloride channels belonging to the ClC family are ubiquitous and participat
e in a wide variety of physiological and pathophysiological processes. To d
efine sequence segments in ClC channels that contribute to the formation of
their ion conduction pathway, we employed a combination of site-directed m
utagenesis, heterologous expression, patch clamp recordings, and chemical m
odification of the human muscle ClC isoform, hClC-1. We demonstrate that a
highly conserved 8-amino acid motif (P3) located in the linker between tran
smembrane domains D2 and D3 contributes to the formation of a wide pore ves
tibule facing the cell interior. Similar to a previously defined pore regio
n (P1 region), this segment functionally interacts with the corresponding s
egment of the contralateral subunit. The use of cysteine-specific reagents
of different size revealed marked differences in the diameter of pore-formi
ng regions implying that ClC channels exhibit a pore architecture quite sim
ilar to that of certain cation channels, in which a narrow constriction con
taining major structural determinants of ion selectivity is neighbored by w
ide vestibules on both sides of the membrane.