SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein recept
ors) and Rab-GTPases, together with their cofactors, mediate the attachment
step in the membrane fusion of vesicles. But how bilayer mixing-the subseq
uent core process of fusion-is catalysed remains unclear. Ca2+/calmodulin c
ontrols this terminal process in many intracellular fusion events. Here we
identify V0, the membrane-integral sector of the vacuolar H+-ATPase, as a t
arget of calmodulin on yeast vacuoles. Between docking and bilayer fusion,
V0 sectors from opposing membranes form complexes. V0 trans-complex formati
on occurs downstream from trans-SNARE pairing, and depends on both the Rab-
GTPase Ypt7 and calmodulin. The maintenance of existing complexes and compl
etion of fusion are independent of trans-SNARE pairs. Reconstituted proteol
ipids form sealed channels, which can expand to form aqueous pores in a Ca2
+/calmodulin-dependent fashion. V0 trans-complexes may therefore form a con
tinuous, proteolipid-lined channel at the fusion site. We propose that radi
al expansion of such a protein pore may be a mechanism for intracellular me
mbrane fusion.