Multilevel covariance structure models have become increasingly popular in
the psychometric literature in the past few years to account for population
heterogeneity and complex study designs. We develop practical simulation b
ased procedures for Bayesian inference of multilevel binary factor analysis
models. We illustrate how Markov Chain Monte Carlo procedures such as Gibb
s sampling and Metropolis-Hastings methods can be used to perform Bayesian
inference, model checking and model comparison without the need for multidi
mensional numerical integration. We illustrate the proposed estimation meth
ods using three simulation studies and an application involving student's a
chievement results in different areas of mathematics.