The use of probes such as monoclonal and polyclonal antibodies to spec
ific cell wall components, at both the light and electron microscope l
evels, has demonstrated the diversity in cell wall composition between
species, between tissues, between different regions of the cell surfa
ce, and even within a single wall. Traditional methods of cell wall an
alysis have provided valuable information on wall composition and arch
itecture, but, by having to rely on the use of bulk samples, have aver
aged out this intrinsic heterogeneity. Fourier Transform Infrared FIR)
microspectroscopy addresses this problem by providing chemical inform
ation from an area as small as 10x10 mu m of a single cell wall fragme
nt or area of a tissue section that has been imaged with a microscope
accessory.We have used FTIR microspectroscopy as a powerful and extrem
ely rapid assay for wall components and putative cross-links in mure.
The spectra are sensitive to polymer conformation, and the use of pola
risers in the microscope accessory allows the orientation of particula
r functional groups to be determined, with respect to the long axis of
elongating cells. The spectra constitute species and tissue-specific
'finger-prints', and the use of classical discriminant analysis may pr
ovide the opportunity for correlating spectral features with chemical,
architectural or rheological wall properties. Spectral mapping of an
area of a specimen allows the morphological features resulting from ce
ll growth and differentiation to be characterised chemically at the si
ngle cell level.