We identified a signaling pathway that prevents initiation of sporulation i
n Bacillus subtillis when replication initiation Is impaired. We isolated m
utations that allow a replication initiation mutant (dnaA) to sporulate. Th
ese mutations affect a small open reading frame, sda, that was overexpresse
d in replication initiation mutants and appears to be directly regulated by
DnaA. Mutations in replication initiation genes inhibit the onset of sporu
lation by preventing activation of a transcription factor required for spor
ulation, Spo0A. Deletion of sda restored activation of Spo0A in replication
initiation mutants. Overexpression of sda in otherwise wild-type cells inh
ibited activation of Spo0A and sporulation. Purified Sda inhibited a histid
ine kinase needed for activation of Spo0A. Our results indicate that contro
l of sda by DnaA establishes a checkpoint that inhibits activation of Spo0
and prevents futile attempts to initiate sporulation.