The sinking of particulate organic matter from ocean surface waters transpo
rts carbon to the ocean interior(1,2), where almost all is then recycled. T
he unrecycled fraction of this organic matter can become buried in ocean se
diments, thus sequestering carbon and so influencing atmospheric carbon dio
xide concentrations(3). The processes controlling the extensive biodegradat
ion of sinking particles remain unclear, partly because of the difficulty i
n resolving the composition of the residual organic matter at depth with ex
isting chromatographic techniques(4). Here, using solid-state C-13 NMR spec
troscopy(5), we characterize the chemical structure of organic carbon in bo
th surface plankton and sinking particulate matter from the Pacific Ocean(4
) and the Arabian Sea(6). We found that minimal changes occur in bulk organ
ic composition, despite extensive (>98%) biodegradation, and that aminoacid
-like material predominates throughout the water column in both regions. Th
e compositional similarity between phytoplankton biomass and the small remn
ant of organic matter reaching the ocean interior indicates that the format
ion of unusual biochemicals, either by chemical recombination(7) or microbi
al biosynthesis(8), is not the main process controlling the preservation of
particulate organic carbon within the water column at these two sites. We
suggest instead that organic matter might be protected from degradation by
the inorganic matrix of sinking particles.