Unlinked autosomal microsatellites in six Jewish and two non-Jewish populat
ions were genotyped, and the relationships among these populations were exp
lored. Based on considerations of clustering, pairwise population different
iation, and genetic distance, we found that the Libyan Jewish group retains
genetic signatures distinguishable from those of the other populations, in
agreement with some historical records on the relative isolation of this c
ommunity. Our methods also identified evidence of some similarity between E
thiopian and Yemenite Jews, reflecting possible migration in the Red Sea re
gion. We suggest that high-resolution statistical methods that use individu
al multilocus genotypes may make it practical to distinguish related popula
tions of extremely recent common ancestry.