Autoimmune diseases are among the most prevalent of afflictions, yet the ge
netic factors responsible are largely undefined. Protein glycosylation in t
he Golgi apparatus produces structural variation at the cell surface and co
ntributes to immune self-recognition. Altered protein glycosylation and ant
ibodies that recognize endogenous glycans have been associated with various
autoimmune syndromes, with the possibility that such abnormalities may ref
lect genetic defects in glycan formation. We show that mutation of a single
gene, encoding a-mannosidase II, which regulates the hybrid to complex bra
nching pattern of extracellular asparagine (N)-linked oligosaccharide chain
s (N-glycans), results in a systemic autoimmune disease similar to human sy
stemic lupus erythematosus, cu-Mannosidase II-deficient autoimmune disease
is due to an incomplete overlap of two conjoined pathways in complex-type N
-glycan production. Lymphocyte development, abundance, and activation param
eters are normal; however, serum immunoglobulins are increased and kidney f
unction progressively falters as a disorder consistent with lupus nephritis
develops. Autoantibody reactivity and circulating immune complexes are ind
uced, and anti-nuclear antibodies exhibit reactivity toward histone, Sm ant
igen, and DNA. These findings reveal a genetic cause of autoimmune disease
provoked by a defect in the pathway of protein N-glycosylation.