M. Adenot et al., INTEREST OF CLUSTER SIGNIFICANCE ANALYSIS IN STRUCTURE-AFFINITY RELATIONSHIPS FOR NONXANTHINE HETEROCYCLIC ANTAGONISTS OF ADENOSINE, European journal of medicinal chemistry, 32(6), 1997, pp. 493-504
In order to define some predictive rules for the discrimination of ade
nosine antagonists by their A, receptor affinity, we performed a syste
matic QSAR analysis. As no significant descriptors of affinity were fo
und, we then proposed to introduce a calculated enthalpy or entropy ch
ange for the interaction as a first approximation of the affinity desc
riptors. Since the structural details of the common receptor binding s
ite remain to be determined, we utilized an indirect strategy involvin
g the simulation of amino acid residues that are thought to interact w
ith the ligand. Estimating enthalpic and entropic components by means
of a semi-empirical quantum mechanical AM 1 force calculation, we foun
d a significant clustering of enthalpy change values. This method prov
ides a good descriptor of interaction and also a simple tool for testi
ng hypotheses on the nature of putative binding sites.