Two microsatellites (CD4 and F13A1) were investigated in seven Brazilian po
pulations: one group each of European- and African-derived subjects from Po
rto Alegre, southern Brazil, and five Amerindian tribes (three Tupi-Monde s
peaking [Gaviao, Surui, and Zoro], one Macro-Ge [Xavante], and one Carib [W
ai-Wai]). For both markers, neo-Brazilians presented with a high diversity,
but Amerindians showed a low level of variability. Genotype frequency dist
ributions were heterogeneous among populations, the only exception being si
milar CD4 frequencies in Afro- and Euro-Brazilians. Gene diversity analysis
revealed that most of the total variation is due to intrapopulational dive
rsity in all populations, Because of the high information content of these
markers in Afro- and Euro-Brazilians, these systems are most appropriate fo
r forensic analyses. The comparison among Brazilian and other world populat
ions revealed high similarity among populations of the same ethnic group, i
ndicating a high discriminative power for these markers.