Chaperonins are among the most abundant proteins in thermophilic and h
yperthermophilic microorganisms. A fast and efficient protocol has bee
n designed to purify chaperonins from natural microbial sources on a m
illigram scale. The procedure takes advantage of the low isoelectric p
oint and high molecular mass of chaperonins. A strong anion-exchange m
atrix in combination with gel permeation chromatography and separation
on a high-resolution MonoQ column were used to purify four chaperonin
s from bacteria and archaea. We also show how the procedure for one of
the hyperthermophilic chaperones can be easily scaled up. Pure chaper
onins were characterized by two-dimensional polyacrylamide gel electro
phoresis and high-performance liquid chromatography to establish heter
ogeneity. Pure chaperonins retain the characteristic double ring struc
ture in electron microscopy and they bind unfolded proteins.