Chromosomal instability is believed to be a common feature of most human tu
mors, but the stage at which such instability originates has not been defin
ed. At the molecular level, chromosomal instability is characterized by all
elic imbalance (AI), representing losses or gains of defined chromosomal re
gions. We have assessed AI in early colorectal tumors using newly developed
methods for assessing AI in complex cell populations. A total of 32 adenom
as of average size (2 mm; range, 1-3 mm) were studied. AI of chromosome 5q
markers occurred in 55% of tumors analyzed, consistent with a gatekeeping r
ole of the adenomatous polyposis coli tumor suppressor gene located at chro
mosomal position 5q21. AI was also detected in each of the other four chrom
osomes tested. The fractions of adenomas with AI of chromosomes 1p, 8p, 15q
, and 18q were 10, 19, 28, and 28%, respectively, Over 90% of the tumors ex
hibited AI of at least one chromosome, and 67% had allelic imbalance of a c
hromosome other than 5q. These findings demonstrate that AI is a common eve
nt, even in very small tumors, and suggest that chromosomal instability occ
urs very early during colorectal neoplasia.