An exponential modeling algorithm for protein structure completion by X-ray crystallography

Citation
Vl. Shneerson et al., An exponential modeling algorithm for protein structure completion by X-ray crystallography, ACT CRYST A, 57, 2001, pp. 163-175
Citations number
47
Categorie Soggetti
Physical Chemistry/Chemical Physics
Journal title
ACTA CRYSTALLOGRAPHICA SECTION A
ISSN journal
01087673 → ACNP
Volume
57
Year of publication
2001
Part
2
Pages
163 - 175
Database
ISI
SICI code
0108-7673(200103)57:<163:AEMAFP>2.0.ZU;2-M
Abstract
An exponential modeling algorithm is developed for protein structure comple tion by X-ray crystallography and tested on experimental data from a 59-res idue protein. An initial noisy difference Fourier map of missing residues o f up to half of the protein is transformed by the algorithm into one that a llows easy identification of the continuous tube of electron density associ ated with that polypeptide chain. The method incorporates the paradigm of p hase hypothesis generation and cross validation within an automated scheme.