T(h)e cerebellar cortex of many vertebrates shows a striking parasagittal c
ompartmentation that is thought to play a role in the establishment and mai
ntenance of functional cerebellar connectivity. Here, we demonstrate the ex
istence of multiple parasagittal raphes of cells in the molecular layer of
the developing cerebellar cortex of postnatal mouse. The histological appea
rance and immunostaining profile of the raphe cells suggest that they are m
igrating granule cells. We therefore conclude that the granule cell raphes
previously described in birds also exist in a mammalian species. The raphes
in mouse are visible on nuclear stains from around birth to postnatal day
6 and are frequently found at the boundaries of Purkinje cell segments that
differentially express cadherins ("early-onset" parasagittal banding patte
rn). A similar relation between the raphe pattern and various markers for t
he early-onset banding pattern has been found in the chicken cerebellum. On
e of the cadherins mapped in the present study (OL-protocadherin) continues
to be expressed in specific Purkinje cell segments until at least postnata
l day 14. At this stage of development, the borders of the OL-protocadherin
-positive Purkinje cell segments coincide with the borders of Purkinje cell
segments that express zebrin II, a marker for the "late-onset" parasagitta
l banding pattern which persists in the adult cerebellum. These findings de
monstrate that the early-onset banding pattern, as reflected in the complem
entary arrangement of raphes/Purkinje cell segments, and the late-onset pat
tern of zebrin II expression share at least some positional cues during dev
elopment.