Molecular diversity via alternative splicing is important for cellular func
tion and development. SR proteins are strong candidate regulators of altern
ative splicing because they can modulate splice site selection. However, en
dogenous substrates for SR proteins are largely unknown, and their roles as
splicing regulators in vertebrate development are unclear. Here we report
that Cre-mediated conditional deletion of the prototypical SR protein SC35
in the thymus causes a defect in T cell maturation. Deletion of SC35 alters
alternative splicing of CD45, a receptor tyrosine phosphatase known to be
regulated by differential splicing during thymocyte development and activat
ion. This study establishes a model to address the function of SR proteins
in physiological settings and reveals a critical role of SC35 in a T cell-s
pecific regulated splicing pathway.