Proteins containing AT hooks bind A/T-rich DNA through a nine-amino-acid mo
tif and are thought to co-regulate transcription by modifying the architect
ure of DNA, thereby enhancing the accessibility of promoters to transcripti
on factors(1,2). Here we describe AKNA, a human AT-hook protein that direct
ly binds the A/T-rich regulatory elements of the promoters of CD40 and CD40
ligand (CD40L) and coordinately regulates their expression. Consistent wit
h its function, AKNA is a nuclear protein that contains multiple PEST prote
in-cleavage motifs, which are common in regulatory proteins with high turno
ver rates(3). AKNA is mainly expressed by B and T lymphocytes, natural kill
er cells and dendritic cells. During B-lymphocyte differentiation, AKNA is
mainly expressed by germinal centre B lymphocytes, a stage in which recepto
r and ligand interactions are crucial for B-lymphocyte maturation(4-12). Ou
r findings show that an AT-hook molecule can coordinately regulate the expr
ession of a key receptor and its ligand, and point towards a molecular mech
anism that explains homotypic cell interactions.