Breast cancers differ in response to treatment and may have a divergent cli
nical course despite having a similar histopathological appearance. New tec
hnology using DNA microarrays provides a systematic method to identify key
markers for prognosis and treatment response by profiling thousands of gene
s expressed in a single cancer. Microarray profiling of 38 invasive breast
cancers now confirms striking molecular differences between ductal carcinom
a specimens and suggests a new classification for oestrogen-receptor negati
ve breast cancer. Future approaches will need to include methods for high-t
hroughput clinical validation and the ability to analyze microscopic sample
s.