Transgene technology provides a powerful tool for developing traits that ar
e otherwise difficult to achieve through conventional breeding. In order to
effectively apply the technology to breeding, we need to understand how tr
ansgenes behave in plants. Transgenes may or may not follow Mendelian segre
gation; their expression can be significantly affected by integration posit
ions and structures of the transgenic DNA in host genomes; transgenes may b
ecome unstable over generations, genetic backgrounds and environmental cond
itions; and they may have significantly negative impact on expression of en
dogenous genes. If not well understood, these hurdles could become signific
ant barriers in transgenic breeding. This paper reviews some genetic issues
and pitfalls that are often encountered in transgenic breeding. Because of
the necessity of being brief, transgene expression, silencing, and breedin
g are the three areas of focuses in this discussion. While molecular mechan
isms underlying many of the transgenic phenomena have not been completely u
nderstood, some practical `rules' are now available for creating, evaluatin
g and selecting desirable transgenic transformants. It can be certain that
with more transgenic plants generated and characterized our knowledge of tr
ansgene genetics at both molecular and plant levels will continue to accumu
late.