The comprehensive analysis of the genome sequence of the plant Arabidopsis
thaliana has been completed recently. The genome sequence and associated an
alyses provide the foundations for rapid progress in many fields of plant r
esearch, such as the exploitation of genetic variation in Arabidopsis ecoty
pes, the assessment of the transcriptome and proteome, and the association
of genome changes at the sequence level with evolutionary processes. Nevert
heless, genome sequencing and analysis are only the first steps towards a n
ew plant biology, Much remains to be done to refine the analysis of encoded
genes, to define the functions of encoded proteins systematically and to e
stablish new generations of databases to capture and relate diverse data se
ts generated in widely distributed laboratories.