Drainage systems of the Great Plains and western Gulf Slope underwent subst
antial changes through diversions and stream captures during the Pleistocen
e, either as the result of the glacial advances or through independent geol
ogic processes. The distributions of a variety of fishes that range across
west-central North America, such as the plains killifish (Fundulus zebrinus
), are thought to be the product of this Pleistocene influence. We examined
the geographic pattern of genetic variation in F. zebrinus using three all
ozyme loci (n = 793), mitochondrial DNA restriction fragment length polymor
phisms (RFLPs, n = 352), and sequencing of the mitochondrial cytochrome oxi
dase I (COI, n = 23) in an attempt to understand the roles of dispersal and
vicariance. The phylogeographic patterns were concordant between the alloz
yme and mitochondrial data with the exception of the population in the Nort
h Canadian River. The populations fell into three geographic assemblages, w
hich we designated as northern, central, and southern. A large phylogenetic
break (average Roger's D = 0.702; average sequence divergence in RFLPs = 4
.6%; average sequence divergence in COI = 5.5%) separated the northern/cent
ral and southern assemblages. The northern region was likely colonized some
time during the mid-Pleistocene. Fish in the Brazos and Pecos Rivers probab
ly reached these drainages through stream captures of the Red River. The la
rge phylogenetic break between the northern/central and southern clades sup
ports previous attempts to recognize two species of plains killifish: F. ze
brinus and F. kansae.