Cleidocranial dysplasia (CCD), which is caused by mutations of the core bin
ding factor alpha 1 (CBFA1)/runt-related gene 2 (Runx2), is an autosomal, d
ominantly inherited disorder of high penetrance affecting skeletal ossifica
tion and tooth development. Recently, we found a novel frameshift mutation
383-T-insertion (S128F) in exon 3 in the CBFA1 gene of a Japanese classic C
CD patient. We describe our detailed investigation of the patient with CCD
associated with the CBFA 1 mutation. The patient showed the characteristic
expression of CCD, such as dysplasia of the clavicles, patent fontanelles,
short stature, impacted supernumerary teeth, and delayed eruption of the pe
rmanent teeth. In addition to these characteristics, orthopantomography del
ayed ossification of the mandibular symphysis and a three-dimensional compu
ted tomograph (3D-CT) analysis showed hypoplasia of the zygomatic arch. Fur
thermore, the acellular cementum of an impacted supernumerary tooth was abs
ent in this patient. Thus, the CBFA1 mutation was critical for the pathogen
esis of CCD in this patient.