Analysis of the mRNA capping apparatus of the malaria parasite Plasmodium f
alciparum illuminates an evolutionary connection to fungi rather than metaz
oans. We show that P. falciparum encodes separate RNA guanylyltransferase (
Pgt1) and RNA triphosphatase (Prt1) enzymes and that the triphosphatase com
ponent is a member of the fungal/viral family of metal-dependent phosphohyd
rolases, which are structurally and mechanistically unrelated to the cystei
ne-phosphatase-type RNA triphosphatases found in metazoans and plants. Thes
e results highlight the potential for discovery of mechanism-based antimala
rial drugs designed to specifically block the capping of Plasmodium mRNAs.
A simple heuristic scheme of eukaryotic phylogeny is suggested based on the
structure and physical linkage of the triphosphatase and guanylyltransfera
se enzymes that catalyze cap formation.