Linear cationic beta -cyclodextrin-based polymers (beta CDPs) are capable o
f forming polyplexes with nucleic acids and transfecting cultured cells. Th
e beta CDPs are synthesized by the condensation of a diamino-cyclodextrin m
onomer A with a diimidate comonomer B. In this paper, the effects of polyme
r structure on polyplex formation, in vitro transfection efficiency and tox
icity are elucidated. By comparison of the beta CDPs to polyamidines lackin
g cyclodextrins, the inclusion of a cyclodextrin moiety in the comonomer A
units reduces the IC(50)s of the polymer by up to 3 orders of magnitude. Th
e spacing between the cationic amidine groups is also important. Different
polymers with 4, 5, 6, 7, 8, and 10 methylene units (beta CDP4, 5, 6, 7, 8,
and 10) in the comonomer B molecule are synthesized. Transfection efficien
cy is dependent on comonomer B length with up to 20-fold difference between
polymers. Optimum transfection is achieved with the beta CDP6 polymer. In
vitro toxicity varied by 1 order of magnitude and the lowest toxicity is ob
served with beta CDP8. The LD40 of the beta CDP6 to mice is 200 mg/kg, maki
ng this polymer a promising agent for in vivo gene delivery applications.