Genome-scale compositional comparisons in eukaryotes

Citation
Aj. Gentles et S. Karlin, Genome-scale compositional comparisons in eukaryotes, GENOME RES, 11(4), 2001, pp. 540-546
Citations number
22
Categorie Soggetti
Molecular Biology & Genetics
Journal title
GENOME RESEARCH
ISSN journal
10889051 → ACNP
Volume
11
Issue
4
Year of publication
2001
Pages
540 - 546
Database
ISI
SICI code
1088-9051(200104)11:4<540:GCCIE>2.0.ZU;2-T
Abstract
We examined dinucleotide relative abundances and their biases in recent seq uences of eukaryotic genomes and chromosomes, including human chromosomes 2 1 and 22, Saccharomyces cerevisiae, Arabidopsis thaliana, and Drosophila me lanogaster. We found that dinucleotide relative abundances are remarkably c onstant across human chromosomes and within the DNA of a particular species . The dinucleotide biases differ between species, providing a genome signat ure that is characteristic of the bulk properties of an organism's DNA. We detail the relations between species genome signatures and suggest possible mechanisms for their origin and maintenance.