Evolutionary centromere repositioning is a paradox we have recently discove
red while studying the conservation of the phylogenetic chromosome IX in pr
imates. Two explanations were proposed: a conservative hypothesis assuming
sequential pericentric inversions, and a more challenging assumption involv
ing centromere emergence during evolution. The complex evolutionary history
showed by chromosome IX did not allow us to clearly distinguish between th
ese two hypotheses. Here we report comparative studies of chromosome X in t
wo lemur species: the black lemur and the ringtailed lemur. The X chromosom
e is telocentric in the black lemur and almost metacentric in the ringtaile
d lemur. The marker order along these chromosomes, however, was found to be
perfectly colinear with humans. Our data unequivocally point to centromere
emergence as the most likely explanation of centromere repositioning.