The pattern and scale of the genetic structure of populations provides valu
able information for the understanding of the spatial ecology of population
s, including the spatial aspects of density fluctuations. In the present pa
per, the genetic structure of periodically fluctuating lemmings (Dicrostony
x groenlandicus) in the Canadian Arctic was analysed using mitochondrial DN
A (mtDNA) control region sequences and four nuclear microsatellite loci. Lo
w genetic variability was found in mtDNA, while microsatellite loci were hi
ghly variable in all localities, including localities on isolated small isl
ands. For both genetic markers the genetic differentiation was clear among
geographical regions but weaker among localities within regions. Such a pat
tern implies gene now within regions. Based on theoretical calculations and
population census data from a snap-trapping survey, we argue that the obse
rved genetic variability on small islands and the low level of differentiat
ion among these islands cannot be explained without invoking long distance
dispersal of lemmings over the sea ice. Such dispersal is unlikely to occur
only during population density peaks.