The zebra mussel Dreissena polymorpha, has been invading western Central Eu
rope since the early 19th century, coming from the Pontocaspian by two rout
es, each interconnected by large rivers and canals constructed at that time
. By 1992 these two invasion populations had been given the opportunity to
mix extensively across the newly built Main-Danube canal. Different hypothe
ses about the dynamics of genetic interchange have been postulated, ranging
from a stable intergradation zone to complete mixing. We analysed the allo
zyme variation at nine loci in 14 or 17 populations, respectively, across t
he canal on two occasions: 2 1/2 years and 4 1/2 years after the opening. A
t the first sampling a strong genetic differentiation at three loci was fou
nd between the two invasion lines. This differentiation declined during the
two-year period. The main effect was an assimilation of the Main populatio
ns according to the gene frequencies of the Danube populations, which sugge
st a swamping of the Main populations by Danube-type larvae. This inference
is congruent with the overall water flow regime across the canal, i.e. act
ive pumping from the Danube into the Main drainage system. The observed int
erchange processes allow some inferences to be made about the selective sig
nificance of the highly heterozygous allozyme loci in D. polymorpha.