The diversity of compound collections required for finding lead structures
in pharmaceutical research can be provided by means of combinatorial organi
c chemistry. The resultant enormous number of single compounds but also of
compound mixtures represents a challenge for the analyst. With the introduc
tion of Fourier transform ion cyclotron resonance mass spectrometry (FTICR-
MS or FT-MS), a new and, as yet, not widespread mass spectrometric techniqu
e (a means of analysis of such compound libraries with a very high mass res
olution) high mass accuracy and high sensitivity has become available. More
over, in combination with electrospray ionization (ESI), not only high-th r
ough put measurements via flow-injection ana lysis (FIA) but also coupling
with separation techniques such as high-performance liquid chromatography (
HPLC) or capillary electrophoresis (CE) is possible. Structural verificatio
n by way of decomposing ions (MSn; n greater than or equal to 2) using a va
riety of different dissociation techniques can be performed by FTICR-MS. Th
is is the first review specifically covering applications of FTICR-MS in th
e field of combinatorial chemistry. (C) 2001 John Wiley & Sons, Inc.