Verrucous carcinoma (VC), a variant of squamous cell carcinoma (SCC), is di
stinct from SCC in morphology and behavior. The underlying genetic changes
involved in the development of VC and its precursor verrucous hyperplasia (
VH) are unknown. This study determined whether chromosomal regions frequent
ly lost during the development of SCC are also lost in the VH/VC variant. T
wenty-five VH and 17 VC were analyzed for loss of heterozygosity (LOH) at 1
9 loci on 7 chromosome arms using microsatellite analysis. These data were
compared with those from 47 reactive hyperplasias, 92 dysplasias (54 low- a
nd 38 high-grade), and 41 SCCs. The results showed that VC/VH shared many o
f the losses present in dyspiasia/SCC but differed in two aspects. First, V
C/VH showed early acquisition of loss, compared with a gradual accumulation
of losses from dysplasias to SCC. The LOH pattern of VH was similar to tha
t of high-grade dysplasia and sharply different from reactive hyperplasia.
The loss in VH often involved multiple arms (in 60% of VH vs 0% of reactive
lesions). Only a marginal elevation of loss was observed at 9p (p = 0.06)
and 4q (p = 0.05) from VH to VC because of the high degree of loss already
present in VH. Second, a strikingly lower frequency of loss at 17p was note
d in VH/VC compared with dysplasia/SCC and may indicate human papillomaviru
s (HPV) involvement. The finding of high-risk LOH profiles in VH may partly
account for the high-progression risk seen for VH and also has potentially
important clinical implications. The difficult pathological diagnosis of V
H/VC from reactive hyperplasia frequently requires repeated biopsies acid r
esults in delay in diagnosis and significantly increased mortality/morbidit
y. Microsatellite analysis might facilitate this differential diagnosis.