Synthesis of novel 3 '-C-methylene thymidine and 5-methyluridine/cytidine H-phosphonates and phosphonamidites for new backbone modification of oligonucleotides
Hy. An et al., Synthesis of novel 3 '-C-methylene thymidine and 5-methyluridine/cytidine H-phosphonates and phosphonamidites for new backbone modification of oligonucleotides, J ORG CHEM, 66(8), 2001, pp. 2789-2801
Novel 5 ' -O-DMT- and MMT-protected 3 ' -C-methylene-modified thymidine, 5-
methyluridine, and 5-methylcytidine H-phosphonates 1-7 with O-methyl, fluor
o, hydrogen, and O-(2-methoxyethyl) substituents at the 2 ' -position have
been synthesized by a new effective strategy from the corresponding key int
ermediates 3 ' -C-iodomethyl nucleosides and intermediate BTSP, prepared in
situ through the Arbuzov reaction. The modified reaction conditions for th
e Arbuzov reaction prevented the loss of DMT- and MMT-protecting groups, an
d directly provided the desired 5 ' -O-DMT- and/or MMT-protected 3 ' -C-met
hylene-modified H-phosphonates 1-6 although some of them were also prepared
through the manipulation of protecting groups after the P-C bond formation
. The modified Arbuzov reaction of 3 ' -C-iodomethyl-5-methylcytidine 53, p
repared from its 5-methyluridine derivative 42, with BTSP provided the 5-me
thylcytidine H-phosphonate 54, which was further transferred to the corresp
onding 4-N-(N-methylpyrrolidin-2-ylidene)-protected H-phosphonate monomer 7
. 5 ' -O-MMT-protected 3 ' -C-methylene-modified H-phosphonates 5, 3, and 7
were converted to the corresponding cyanoethyl H-phosphonates 50, 51, and
56 using DCC as a coupling reagent. One-pot three-step reactions of 50, 51,
and 56 provided the desired 3 ' -C-methylene-modified phosphonamidite mono
mers 8-10. Some of these new 3 ' -methylene-modified monomers 1-10 have bee
n successfully utilized for the synthesis of 3 ' -methylene-modified oligon
ucleotides, which have shown superior antisense properties including nuclea
se resistance and binding affinity to the target RNA.