Genetic structure and species relationships were studied in three closely r
elated mosquito species, Anopheles dirus A, C and D in Thailand using 11 mi
crosatellite loci and compared with previous mitochondrial DNA (mtDNA) data
on the same populations. All three species were well differentiated from e
ach other at the microsatellite loci. Given the almost complete absence of
mtDNA differentiation between An. dirus A and D, this endorses the previous
suggestion of mtDNA introgression between these species. The high degree o
f differentiation between the northern and southern population of An. dirus
C (R-ST = 0.401), in agreement with mtDNA data, is suggestive of incipient
species. The lack of genetic structure indicated by microsatellites in fou
r populations of An. dirus A across northern Thailand also concurs with mtD
NA data. However, in An. dirus D a limited but significant level of structu
re was detected by microsatellites over similar to 400 km in northern Thail
and, whereas the mtDNA detected no population differentiation over a much l
arger area (>1200 km). There is prior evidence for population expansion in
the mtDNA. If this is due to a selective sweep originating in An. dirus D,
the microsatellite data may indicate greater barriers to gene flow within A
n. dirus D than in species A. Alternatively, there may have been historical
introgression of mtDNA and subsequent demographic expansion which occurred
first in An. dirus D so enabling it to accumulate some population differen
tiation. In the latter case the lack of migration-drift equilibrium preclud
es the inference of absolute or relative values of gene flow in An. dirus A
and D.