Cannibalism is widespread in natural populations of fishes, where the stoma
chs of adults frequently contain conspecific juveniles. Furthermore, field
observations suggest that guardian males routinely eat offspring from their
own nests. However, recent genetic paternity analyses have shown that fish
nests often contain embryos not sired by the nest-tending male (because of
cuckoldry events, egg thievery, or nest piracy). Such findings, coupled wi
th the fact that several fish species have known capabilities for distingui
shing kin from nonkin. raise the possibility that cannibalism by guardian m
ales is directed primarily or exclusively toward unrelated embryos in their
nests. Here, we test this hypothesis by collecting freshly cannibalized em
bryos from the stomachs of several nest-tending darter and sunfish males in
nature and determining their genetic parentage by using polymorphic micros
atellite markers. Our molecular results clearly indicate that guardian male
s do indeed consume their own genetic offspring, even when unrelated (foste
r) embryos are present within the nest. These data provide genetic document
ation of filial cannibalism in nature. Furthermore, they suggest that the p
henomenon may result, at least in part, from an inability of guardians to d
ifferentiate between kin and nonkin within their own nests.