Previous studies have provided a limited examination of the expression of t
he orphan melatonin-related receptor in the pituitary and hypothalamus of h
uman and sheep and retinal tissue in the sheep. The present study reports e
vidence of conservation of expression in regions of the hypothalamus (dorsa
l medial hypothalamus, lateral hypothalamus, arcuate nucleus), the epitheli
al layer lining the third ventricle and the paraventricular thalamic nucleu
s of the mouse, rat and hamster. An extensive and detailed analysis of mela
tonin-related receptor mRNA expression in the mouse central nervous system
and peripheral tissues is presented. Mapping the distribution throughout th
e entire mouse brain has revealed new sites of expression in a number of br
ain nuclei, including preoptic areas, parabrachial nuclei and widespread di
stribution in the olfactory bulb. Reverse transcriptase-polymerase chain re
action was performed with RNA isolated from peripheral tissues revealing ex
pression of the melatonin-related receptor mRNA in the mouse kidney, adrena
l gland, intestine, stomach, heart, lung, skin. testis and ovary. These res
ults suggest a conserved function in neuroendocrine regulation and a potent
ial role in coordinating physiological responses in the central nervous sys
tem and peripheral tissues.