The formation of many complex structures is controlled by a special class o
f transcription factors encoded by selector genes. it is shown that SCALLOP
ED, the DNA binding component of the selector protein complex for the Droso
phila wing field, binds to and directly regulates the cis-regulatory elemen
ts of many individual target genes within the genetic regulatory network co
ntrolling wing development. Furthermore, combinations of binding sites for
SCALLOPED and transcriptional effecters of signaling pathways are necessary
and sufficient to specify wing-specific responses to different signaling p
athways. The obligate integration of selector and signaling protein inputs
on cis-regulatory DNA may be a general mechanism by which selector proteins
control extensive genetic regulatory networks during development.