Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8
C. Charlier et al., Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8, GENOME RES, 11(5), 2001, pp. 850-862
Two ovine BAC clones and a connecting long-range PCR product, jointly spann
ing similar to 250 kb and representing most of the MULGES-OY3 marker interv
al known to contain the ck locus, were completely sequenced. The resulting
genomic sequence was aligned with its human ortholog and extensively annota
ted. Six transcripts, four of which were novel, were predicted to originate
from within the analyzed region and their existence confirmed experimental
ly: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8. RT-PCR experiments perform
ed on a range of tissues sampled from an 8-wk-old animal demonstrated the p
referential expression of all six transcripts in skeletal muscle, which sug
gests that they are under control of common regulatory elements. The six tr
anscripts were also shown to be subject to parental imprinting: DLK1, DAT,
and PEG11 were shown to be paternally expressed and GTL2, antiPEG11, and ME
G8 to be maternally expressed.